Orione
Common Tools
Get data
NGS: quality control
NGS: manipulation
NGS: mapping
NCBI BLAST+
Microbiology
Get microbial data
NGS: RNA-seq for bacteria
NGS: de novo assembly
NGS: post assembly
Gene annotation
Variant Calling
NGS: SNP effects
NGS: indel analysis
NGS: SAM tools
NGS: GATK tools
VCF tools
Metagenomics
Metaphlan
Other tools
NGS: RNA Analysis
RNA-seq
Filter combined transcripts
miRNA prediction
Chip-Seq
NGS: peak calling
Motif tools
Other tools
Text manipulation
FASTQ manipulation
FASTA manipulation
NGS: Picard (beta)
Filter and Sort
Join, Subtract and Group
Convert Formats
Operate on Genomic Intervals
NGS: Simulation
Evolution
Orione
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Metaphlan
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