MuMMer

MuMMer aligns a drfat sequence to a reference one. It also performes SNP detection.

Details

It runs with default parameters, in the next release a fine tuning will be allowed.

References

Versatile and open software for comparing large genomes.
S. Kurtz, A. Phillippy, A.L. Delcher, M. Smoot, M. Shumway, C. Antonescu and S.L. Salzberg.
Genome Biology 2004, 5:R12