SSAKE is a genomics application for de novo assembly of millions of very short DNA sequences. It is an easy-to-use, robust, reliable and tractable clustering algorithm for very short sequence reads, such as those generated by Illumina Ltd.



Assembling millions of short DNA sequences using SSAKE.
R.L. Warren, G.G. Sutton, S.J.M. Jones, and R.A. Holt.
Bioinformatics (2007) 23(4): 500-501.